Changes¶
3.2.0 (2021-06-08)¶
Changes:¶
Add reference link to ReadTheDocs URL of Weaver in API landing page.
Add references to OGC-API Processes requirements and recommendations for eventual conformance listing (relates to #231).
Add
datetime
query parameter for job searches queries (relates to #236).Add
limit
query parameter validation and integration for jobs in retrieve queries (relates to #237).
Fixes:¶
Pin
pywps==4.4.3
and fix incompatibility introduced by its refactor of I/O base classes in #602 (specifically commit 343d825), which broke theComplexInput
work-around to avoid useless of file URLs (see issue #526).Fix default execution mode specification in process job control options (fixes #182).
Fix old OGC-API WPS REST bindings link in landing page for the more recent OGC-API Processes specification.
Fix invalid deserialization of schemas using
not
keyword that would result in all fields returned instead of limiting them to the expected fields from the schema definitions forLiteralInputType
in process description.Adjust
InputType
andOutputType
schemas to useallOf
instead ofanyOf
definition since all sub-schemas that define them must be combined, with their respectively required or optional fields.
3.1.0 (2021-04-23)¶
Changes:¶
Add caching of remote WPS requests according to
request-options.yml
and request headerCache-Control
to allow reduced query of pre-fetched WPS client definition.Add
POST /processes/{}/execution
endpoint that mimics its jobs counterpart to respect OGC-API Processes updates (see issue opengeospatial/ogcapi-processes#124 and PR opengeospatial/ogcapi-processes#159, resolves #235).Add OpenAPI schema examples for some of the most common responses.
Add missing schema definitions for WPS XML requests and responses.
Improve schema self-validation with their specified default values.
Add explicit options usage and expected parsing results for all test variations of OpenAPI schemas generation and
colander
object arguments for future reference intests.wps_restapi.test_colander_extras
.
Fixes:¶
Fix erroneous tags in job inputs schemas.
Fix handling of deeply nested schema validator raising for invalid format within optional parent schema.
Fix retrieval of database connection from registry reference.
Fix test mock according to installed
pyramid
version to avoid error with modified mixin implementations.
3.0.0 (2021-03-16)¶
Changes:¶
Provide HTTP links to corresponding items of job in JSON body of status, inputs and outputs routes (#58, #86).
Provide
Job.started
datetime and calculateJob.duration
from it to indicate the duration of the process execution instead of counting from the time the job was submitted (i.e.:Job.created
).Provide OGC compliant
<job-uri>/results
response schema as well as some expectedcode
/description
fields in case where the request fails.Add
<job-uri>/outputs
providing thedata
/href
formatted job results as well as<job-uri>/inputs
to retrieve the inputs that were provided during job submission (#86).Deprecate
<job-uri>/result
paths (indicated in OpenAPI schemas and UI) in favor of<job-uri>/outputs
which provides the same structure with additionallinks
references (#58). Result path requests are redirected automatically to outputs.Add more reference/documentation links to WPS-1/2 and update conformance references (#53).
Add some minimal caching support of routes.
Adjust job creation route to return
201
(created) as it is now correctly defined by the OGC API specification (#14).Add
Job.link
method that auto-generates all applicable links (inputs, outputs, logs, etc.).Add
image/jpeg
,image/png
,image/tiff
formats to supportedweaver.formats
(relates to #100).Handle additional trailing slash resulting in
HTTPNotFound [404]
to automatically resolve to corresponding valid route without the slash when applicable.Provide basic conda environment setup through
Makefile
for Windows bash-like shell (ie:MINGW
/MINGW64
).Update documentation for minimal adjustments needed to run under Windows.
Update OpenAPI template to not render the useless version selector since we only provide the current version.
Update Swagger definitions to reflect changes and better reuse existing schemas.
Update Swagger UI to provide the ReadTheDocs URL.
Add crim-ca/cwltool@docker-gpu as
cwltool
requirement to allow processing of GPU-enabled dockers with nvidia-docker.Add fmigneault/cornice.ext.swagger@openapi-3 as
cornice_swagger
requirement to allow OpenAPI-3 definitions support of schema generation and deserialization validation of JSON payloads.Disable default auto-generation of
request-options.yml
andwps_processes.yml
configuration files from a copy of their respective.example
files as these have many demo (and invalid values) that fail real execution of tests when no actual file was provided.Add per-request caching support when using
request_extra
function, and caching control according to request headers andrequest-options.yml
configuration.
Fixes:¶
Fix
weaver.config.get_weaver_config_file
called with empty path to be resolved just as requesting the default file path explicitly instead of returning an invalid directory.Fix CWL package path resolution under Windows incorrectly parsed partition as URL protocol.
Fix
AttributeError
ofpywps.inout.formats.Format
equality check compared tonull
object (using getter patch onnull
since fix #507 not released at this point).Fix potential invalid database state that could have saved an invalid process although the following
ProcessSummary
schema validation would fail and returnHTTPBadRequest [400]
. The process is now saved only after complete and successful schema validation.
2.2.0 (2021-03-03)¶
Changes:¶
Add
weaver.wps.utils.get_wps_client
function to handle the creation ofowslib.wps.WebProcessingService
client with appropriate request options configuration from application settings.
Fixes:¶
Fix job percent progress reported in logs to be more consistent with actual execution of the process (fixes #90).
Fix Job duration not stopped incrementing when its execution failed due to raised error (fixes #222).
Improve race condition handling of
builtin
process registration at application startup.
2.1.0 (2021-02-26)¶
Changes:¶
Ensure that configuration file definitions specified in
processes
andproviders
will override older database definitions respectively matched byid
andname
when starting Weaver if other parameters were modified.Support dynamic instantiation of WPS-1/2 processes from remote WPS providers to accomplish job execution.
Remove previously flagged duplicate code to handle
OWSLib
processes conversion toJSON
for OGC-API.Replace
GET
HTTP request byHEAD
for MIME-type check againstIANA
definitions (speed up).Improve handling of CWL input generation in combination with
minOccurs
,maxOccurs
,allowedValues
anddefault
empty ("null"
) value from WPS process from remote provider (fix #17).Add
hybrid
mode that allows Weaver to simultaneously run local Application Packages and remote WPS providers.Rename
ows2json_output
toows2json_output_data
to emphasise its usage for parsing job result data rather than simple output definition as accomplished byows2json_io
.Remove function duplicating operations accomplished by
ows2json_io
(previously marked with FIXME).Improve typing definitions for CWL elements to help identify invalid parsing methods during development.
Improve listing speed of remote providers that require data fetch when some of them might have become unreachable.
Fixes:¶
Avoid failing WPS-1/2 processes conversion to corresponding OGC-API process if metadata fields are omitted.
Fix invalid function employed for
GET /providers/{prov}/processes/{proc}
route (some error handling was bypassed).
2.0.0 (2021-02-22)¶
Changes:¶
Add support of YAML format for loading
weaver.data_sources
definition.Pre-install
Docker
CLI inworker
image to avoid bad practice of mounting it from the host.Adjust WPS request dispatching such that process jobs get executed by
Celery
worker as intended (see #21 and #126).Move WPS XML endpoint functions under separate
weaver.wps.utils
andweaver.wps.views
to remove the need to constantly handle circular imports issues due to processing related operations that share some code.Move core processing of job operation by
Celery
worker underweaver.processes.execution
in order to separate those components from functions specific for producing WPS-REST API responses.Handle WPS-1/2 requests submitted by GET KVP or POST XML request with
application/json
inAccept
header to return the same body content as if directly calling their corresponding WPS-REST endpoints.Remove
request
parameter of every database store methods since they were not used nor provided most of the time.Changed all forbidden access responses related to visibility status to return
403
instead of401
.Add more tests for Docker applications and test suite execution with Github Actions.
Add more details in sample configurations and provide an example
docker-compose.yml
configuration that defines a typical Weaver API / Worker combination withdocker-proxy
for sibling container execution.Add captured
stdout
andstderr
details in job log following CWL execution error when retrievable.Document the WPS KVP/XML endpoint within the generated OpenAPI specification.
Disable auto-generation of
request_options.yml
file from corresponding empty example file and allow application to start if no such configuration was provided.Remove every Python 2 backward compatibility references and operations.
Drop Python 2 and Python 3.5 support.
Fixes:¶
Target
PyWPS-4.4
to resolve multiple invalid dependency requirements breaking installed packages over builtin Python packages and other compatibility fixes (see geopython/pywps #568).Fix retrieval of database connexion to avoid warning of
MongoClient
opened before fork of processes.Fix indirect dependency
oauthlib
missing fromesgf-compute-api
(cwt
) package.Fix inconsistent
python
reference resolution ofbuiltin
applications when executed locally and in tests (using virtual/conda environment) compared to within Weaver Docker image (using OS python).Fix many typing definitions.
1.14.0 (2021-01-11)¶
Changes:¶
Add
data
input support for CWL Workflow step referring to WPS-3 Process.Add documentation example references to Application Package and Process
Deploy
/Execute
repositories.Add parsing of
providers
inwps_processes.yml
to directly register remote WPS providers that will dynamically fetch underlying WPS processes, instead of static per-service processes stored locally.Add field
visible
towps_processes.yml
entries to allow directly defining the registered processes visibility.Adjust response of remote provider processes to return the same format as local processes.
Fixes:¶
Fix
stdout
/stderr
log file not permitted directly within CWL Workflow (must be inside intermediate steps).Fix missing S3 bucket location constraint within unittests.
1.13.1 (2020-07-17)¶
Changes:¶
No change.
Fixes:¶
Create an
stdout.log
orstderr.log
file in casecwltool
hasn’t created it.
1.13.0 (2020-07-15)¶
Changes:¶
Add AWS S3 bucket support for process input reference files.
Add
weaver.wps_output_s3_bucket
setting to upload results to AWS S3 bucket instead of local directory.Add
weaver.wps_output_s3_region
setting to allow override parameter extracted from AWS profile otherwise.Add more documentation about supported file reference schemes.
Add documentation references to ESGF-CWT Compute API.
Add conditional input file reference fetching (depending on ADES/EMS, process type from CWL
hints
) to take advantage of request-options and all supported scheme formats by Weaver, instead of relying on PyWPS and/or CWL wherever how far downstream the URL reference was reaching.
Fixes:¶
Adjust some docstrings to better indicate raised errors.
Adjust
weaver.processes.wps_package.WpsPackage
to use its internal logger when running the process in order to preserve log entries under its job execution. They were otherwise lost over time across all process executions.
1.12.0 (2020-07-03)¶
Changes:¶
Add multiple CWL ESGF processes and workflows, namely
SubsetNASAESGF
,SubsetNASAESGF
and many more.Add tests for ESGF processes and workflows.
Add documentation for
ESGF-CWTRequirement
processes.Add
file2string_array
andmetalink2netcdf
builtins.Add
esgf_process
Wps1Process
extension, to handleESGF-CWTRequirement
processes and workflows.
Fixes:¶
Reset
MongoDatabase
connection when we are in a forked process.
1.11.0 (2020-07-02)¶
Changes:¶
Generate Weaver OpenAPI specification for readthedocs publication.
Add some sections for documentation (#61).
Add support of documentation RST file redirection to generated HTML for reference resolution in both Github source and Readthedocs served pages.
Improve documentation links, ReadTheDocs format and TOC references.
Avoid logging
stdout/stderr
in workflows.Add tests to make sure processes
stdout/stderr
are logged.Remove Python 2.7 version as not officially supported.
Move and update WPS status location and status check functions into
weaver.wps
module.
Fixes:¶
Fix reported WPS status location to handle when starting with
/
although not representing an absolute path.
1.10.1 (2020-06-03)¶
Changes:¶
No change.
Fixes:¶
Pin
celery==4.4.2
to avoid import error on missingfutures.utils
called internally in following versions.
1.10.0 (2020-06-03)¶
Changes:¶
Add support of value-typed metadata fields for process description.
Enforce
rel
field when specifying anhref
JSON link to match corresponding XML requirement.
1.9.0 (2020-06-01)¶
Changes:¶
Add
weaver.wps_workdir
configuration setting to define the location where the underlyingcwltool
application should be executed under. This can allow more control over the scope of the mounted volumes for Application Package running a docker image.Add mapping of WPS results from the
Job
’s UUID to generated PyWPS UUID for outputs, status and log locations.Add experimental configuration settings
weaver.cwl_euid
andweaver.cwl_egid
to provide effective user/group identifiers to employ when running the CWL Application Package. Using these require good control of the directory and process I/O locations as invalid permissions could break a previously working job execution.Add more logging configuration and apply them to
cwltool
before execution of Application Package.Enforce
no_match_user=False
andno_read_only=False
ofcwltool
’sRuntimeContext
to ensure that docker application is executed with same user asweaver
and that process input files are not modified inplace (readonly) where potentially inaccessible (according to settings). Definition of CWL package will need to add InitialWorkDirRequirement as per defined by reference specification to stage those files if they need to be accessed with write permissions (see: example). Addresses some issues listed in #155.Enforce removal of some invalid CWL hints/requirements that would break the behaviour offered by
Weaver
.Use
weaver.request_options
for WPS GetCapabilities and WPS Check Status requests under the running job.Change default
DOCKER_REPO
value defined inMakefile
to point to reference mentioned inREADME.md
and considered as official deployment location.Add
application/x-cwl
MIME-type supported with updatedEDAM 1.24
ontology.Add
application/x-yaml
MIME-type to known formats.Add
application/x-tar
andapplication/tar+gzip
MIME-type (not official) but resolved as synonymapplication/gzip
(official) to preserve compressed file support during CWL format validation.
Fixes:¶
Set
get_cwl_file_format
default argumentmust_exist=True
instead ofFalse
to retrieve original default behaviour of the function. Since CWL usually doesn’t need to addFile.format
field when no corresponding reference actually exists, this default also makes more sense.
1.8.1 (2020-05-22)¶
Changes:¶
Add Travis-CI smoke test of built docker images for early detection of invalid setup or breaking code to boot them.
Add Travis-CI checks for imports. This check was not validated previously although available.
Adjust
weaver.ini.example
to reflect working demo server configuration (employed by smoke test).Move
weaver
web application toweaver.app
to reduce chances of breakingsetup.py
installation from import errors due toweaver
dependencies not yet installed. Redirect to new location makes this change transparent when loaded with the usualweaver.ini
configuration.
Fixes:¶
Fix base docker image to install Python 3 development dependencies in order to compile requirements with expected environment Python version. Package
python-dev
for Python 2 was being installed instead.Fix failing docker image boot due to incorrectly placed
yaml
import during setup installation.Fix imports according to
Makefile
targetscheck-imports
andfix-imports
.Fix parsing of
PyWPS
metadata to correctly employ values provided byweaver.ini
.
1.8.0 (2020-05-21)¶
Changes:¶
Modify
weaver.utils.request_retry
toweaver.utils.request_extra
to include more requests functionality and reuse it across the whole code base.Add
requests_extra
SSL verification option using specific URL regex(es) matches from configuration settings.Add
file://
transport scheme support directly to utilityrequests_extra
to handle local file paths.Add file
weaver.request_options
INI configuration setting to specify per-request method/URL options.Add
requests_extra
support ofRetry-After
response header (if any available on429
status) which indicates how long to wait until next request to avoid automatically defined response right after.Add
weaver.wps_workdir
configuration setting with allow setting correspondingpywps.workdir
directory.
Fixes:¶
Modify
Dockerfile-manager
to run web application usingpserve
asgunicorn
doesn’t correctly handles worker options anymore when loaded formweaver.ini
with--paste
argument. Also simplifies the command which already required multiple patches such as reapplying the host/port binding from INI file.Fix handling of Literal Data I/O
type
when retrieved fromOWSLib.wps
object with remote WPS XML body.Adjust
make start
target to use newmake install-run
target which installs the dependencies and package in edition mode so that configuration files present locally can be employed for running the application. Previously, one would have to move their configurations to thesite-package
install location of the active Python.Fix
celery>4.2
not found because of application path modification.Fix invalid handling of
wps_processes.yml
reference inweaver.ini
when specified as relative path to configuration directory.Fix handling of
WPS<->CWL
I/O merge ofdata_format
field againstsupported_formats
withpywps>=4.2.4
.Fix installation of
yaml
-related packages for Python 2 backward compatibility.
1.7.0 (2020-05-15)¶
Changes:¶
Add additional status log for
EOImage
input modification with OpenSearch during process execution.Add captured
stderr/stdout
logging of underlying CWL application being executed to resultingJob
logs (addresses first step of #131).Use
weaver.utils.request_retry
in even more places and extend convenience arguments offered by it to adapt it to specific use cases.
Fixes:¶
Fix handling of WPS-REST output matching a JSON file for multiple-output format specified with a relative local path as specified by job output location. Only remote HTTP references where correctly parsed. Also avoid failing the job if the reference JSON parsing fails. It will simply return the original reference URL in this case without expanded data (relates to #25).
Fix CWL job logs to be timezone aware, just like most other logs that will report UTC time.
Fix JSON response parsing of remote provider processes.
Fix parsing of CWL ordered parsing when I/O is specified as shorthand
"<id>":"<type>"
directly under theinputs
oroutputs
dictionary instead of extended JSON object variant such as{"input": {"type:" "<type>", "format": [...]}}
(fixes #137).
1.6.0 (2020-05-07)¶
Changes:¶
Reuse
weaver.utils.request_retry
function across a few locations that where essentially reimplementing the core functionality.Add even more failure-permissive request attempts when validating a MIME-type against IANA website.
Add auto-resolution of common extensions known under PyWPS as well as employing their specific encoding.
Add
geotiff
format type support via PyWPS (#100).Make WPS status check more resilient to failing WPS outputs location not found in case the directory path can be resolved to a valid local file representing the XML status (i.e.: don’t depend as much on the HTTP WPS output route).
Ensure backward support of generic/default
text/plain
I/O when extracted from a referenced WPS-1/2 XML remote process which provides insufficient format details. For CWL output generated from it, replace the glob pattern to match anything (<id>.*
) instead of<id>.txt
extracted fromtext/plain
to simulate MIME-type as*/*
. Issue log warning message for future use cases.
Fixes:¶
Fix invalid
AllowedValue
parsing when usingLiteralData
inputs that resulted inAnyValue
being parsed as a"None"
string. This was transparent in case of string inputs and breaking for other types like integer when they attempted conversion.Fix erroneous
Metadata
keywords passed down toowslib.wps.Metadata
objects in case of more verbose detailed not allowed by this implementation.Fix parsing of explicitly-typed optional array CWL I/O notation that was not considered (i.e.: using
type
as list with additional"null"
instead oftype: "<type>?"
shorthand).Fix parsing of MIME-type from
format
field to exclude additional parameters (e.g.:; charset=UTF-8
for remote IANA validation.
1.5.1 (2020-03-26)¶
Changes:¶
Add unittest of utility function
fetch_file
.Split some unittest utility functions to allow more reuse.
Fixes:¶
Fix invalid
retry
parameter not handled automatically by request.
1.5.0 (2020-03-25)¶
Changes:¶
Adjust incorrectly parsed href file reference as WPS complex input which resulted in failing location retrieval.
Partially address unnecessary fetch of file that has to be passed down to CWL, which will in turn request the file as required. Need update from PyWPS to resolve completely (#91, geopython/pywps#526).
Adjust WPS output results to use relative HTTP path in order to recompose the output URL if server settings change.
Support WPS output results as value (WPS literal data). Everything was considered an href file beforehand.
Add additional
timeout
andretry
during fetching of remote file for processjsonarray2netcdf
to avoid unnecessary failures during edge case connexion problems.Add support of
title
andversion
field ofbuiltin
processes.
Fixes:¶
Patch
builtin
process execution failing sincecwltool 2.x
update.Avoid long fetch operation using streamed request that defaulted to chuck size of 1. Now, we use an appropriate size according to available memory.
1.3.0 (2020-03-10)¶
Changes:¶
Provide a way to override the external URL reported by WPS-1/2 and WPS-REST via configuration settings allowing for more advanced server-side results in response bodies.
1.2.0 (2020-03-06)¶
Changes:¶
Add WPS languages for other wps requests types:
DescribeProcess
andGetCapabilities
.
Fixes:¶
Fix a bug where the validation of
OneOf
items was casting the value to the first valid possibility.
1.1.0 (2020-02-17)¶
Changes:¶
Simplify docker image generation and make base/manager/worker variants all available under the same docker repo docker-registry.crim.ca/ogc/weaver with different tags (#5).
Add planned future support of
Accept-Language
header for WPS-1/2 (geopython/OWSLib 0.20.0
) (#74).Improved job logs update with message and progress to allow better tracking of internal operations and/or problems.
Allow WPS builtin process
jsonarray2netcdf
to fetch a remote file.Change doc to point to DockerHub pavics/weaver images.
Adjust CI rule long-lasting failures until it gets patched by original reference (gitleaks-actions#3).
Fixes:¶
Fix readthedocs documentation generation.
Fix
.travis
docker image build condition.Fix
geopython/OWSLib>=0.19.1
requirement for Python 3.8 support (#62).Fix job update filling due to status location incorrectly resolved according to configured PyWPS output path.
1.0.0 (2020-01-28)¶
New Features:¶
Add
notification_email
field toJob
datatype that stores an encrypted email (according to settings) when provided in the job submission body (#44).Add ability to filter jobs with
notification_email
query parameter (#44).Add jobs statistics grouping by specific fields using comma-separated list
groups
query parameter (#46).Add some tests to evaluate new job search methods / grouping results and responses (#44, #46).
Add handling of multiple CWL field
format
forFile
type.Add missing ontology reference support for CWL field
format
by defaulting to IANA namespace.Add support for I/O
array
ofenum
(ie: multiple values ofAllowedValues
for a given input) (#30).Add support of
label
synonym astitle
for inputs and process description (CWL specifying alabel
will set it in WPS process) (#31)Add support of input
minOccurs
andmaxOccurs
asint
while maintainingstr
support (#14).Add conformance route with implementation links (#53).
Add additional landing page link details (#54).
Add
weaver.wps_restapi.colander_extras.DropableNoneSchema
to auto-handle some schema JSON deserialization.Add
weaver.wps_restapi.colander_extras.VariableMappingSchema
to auto-handle some schema JSON deserialization.
Changes:¶
Use
bump2version
and move all config undersetup.cfg
.Remove enforced
text/plain
for CWLFile
when missingformat
field.Replace bubbling up of too verbose unhandled exceptions (500 Internal Server Error) by summary message and additional internal logging for debugging the cause using an utility exception log decorator.
Use the same exception log decorator to simplify function definitions when HTTP exceptions are already handled.
Make
null
reference a singleton so that multiple instantiation calls all refer to the same instance and produce the expected behaviour of<x> is null
instead of hard-to-identify errors because of english syntax.Remove unused function
weaver.utils.replace_caps_url
and corresponding tests.Remove
weaver.processes.utils.jsonify_value
duplicated byweaver.processes.wps_package.complex2json
.Use more JSON body schema validation using API schema definitions deserialization defined by
weaver.datatype
.Enforce
builtin
processes registration on startup to receive applicable updates.Provide 2 separate docker images for Weaver manager and worker, corresponding to the EMS/ADES API and the
celery
job runner respectively.Update Apache license.
Fixes:¶
Adjust some typing definitions incorrectly specified.
Fix I/O field ordering preserved as specified in payload or loaded reference file.
Fix setting
minOccurs=0
when adefault
is specified in the corresponding CWL I/O (#17, #25).Fix incorrectly overridden
maxOccurs="unbounded"
bymaxOccurs="1"
when a partial array input definition is specified without explicitmaxOccurs
in WPS payload (#17, #25).Fix case where omitted
format[s]
in both CWL and WPS deploy bodies generated a process description with complex I/O (file) without requiredformats
field. Defaulttext/plain
format is now automatically added.Fix case where
format[s]
lists between CWL and WPS where incorrectly merged.Fix
metadata
field within a WPS I/O incorrectly parsed when provided by a WPS-1/2 XML process definition.Fix invalid JSON response formatting on failing schema validation of process deployment body.
Fix docker images to support
pserve
when usinggunicorn>=20.x
dropping support of--paste
config feature.Fix multiple Python 2/3 compatibility issues.
0.2.0 (2019-03-26)¶
Fixes to handle invalid key characters
"$"
and"."
during CWL package read/write operations to database.Fixes some invalid CWL package generation from WPS-1 references.
More cases handled for WPS-1 to CWL
WPS1Requirement
conversion (AllowedValues
,Default
,SupportedFormats
,minOccurs
,maxOccurs
).Add file format validation to generated CWL package from WPS-1 MIME-types.
Allow auto-deployment of WPS-REST processes from WPS-1 references specified by configuration.
Add many deployment and execution validation tests for
WPS1Requirement
.Add
builtin
application packages support for common operations.
0.1.3 (2019-03-07)¶
Add useful Makefile targets for deployment.
Add badges indications in
README.rst
for tracking from repo landing page.Fix security issue of PyYAML requirement.
Fix some execution issues for
Wps1Process
.Fix some API schema erroneous definitions.
Additional logging of unhandled errors.
Improve some typing definitions.
0.1.2 (2019-03-05)¶
Introduce
WPS1Requirement
and correspondingWps1Process
to run a WPS-1 process under CWL.Remove mongodb requirement, assume it is running on an external service or docker image.
Add some typing definitions.
Fix some problematic imports.
Fix some PEP8 issues and PyCharm warnings.
0.1.1 (2019-03-04)¶
Modify Dockerfile to use lighter
debian:latest
instead ofbirdhouse/bird-base:latest
.Modify Dockerfile to reduce build time by reusing built image layers (requirements installation mostly).
Make some buildout dependencies optional to also reduce build time and image size.
Some additional striping of deprecated or invalid items from Twitcher.